3. Carbohydrates


Introduction to Carbohydrates

Megazyme offers a broad range of carbohydrates for scientists involved in enzyme research, acting as the sole global supplier for a number of unique carbohydrates. 

Our best-in-class purity and reputation for quality have resulted in longstanding relationships with some of the foremost research institutes in the world.

While dyed polysaccharide and colourimetric oligosaccharide-based assays are certainly the most convenient methods for the assay of hydrolytic enzymes, polysaccharides and oligosaccharides, as the native substrates encountered by carbohydrate hydrolases in nature, can give the truest insight into their mechanism of action, active site requirements, binding affinities and activities.

a) Polysaccharides

Traditionally, endo-acting carbohydrate hydrolases have been measured using the native polysaccharide as the

enzymatic substrate, followed by quantification of the increase in reducing sugar or decrease in viscosity of the

substrate solution on hydrolysis.


Reducing-sugar methods can be used for the assay of pure enzyme solutions but are unsuitable for use with

crude enzyme extracts that may already contain reducing sugars. Viscosity reduction methods are specific for

endo-hydrolase activity but are tedious to perform and require specialist equipment.

Key features of Megazyme’s polysaccharides

√ Suitable for analysis of purified enzymes

√ Quantitative assay

√ Suitable for gel/agar plate activity screening

√ Suitable for endo-acting enzymes


× Suitable for analysis of crude enzyme extracts

× Chemically defined substrate

× Suitable for automation

× Suitable for exo-acting enzymes

Our range of polysaccharides

Product

Product Code

Enzyme Activity

Amylose (potato)

P-AMYL

α-Amylase

β-Limit Dextrin

P-BLDX

α-Amylase

Arabinan (sugar beet)

P-ARAB

endo-1,5-α-Arabinanase

Xyloglucan (tamarind)

P-XYGLN

endo-Cellulase / endo-1,4-β-Glucanase

Glucomannan (konjac; low viscosity)

P-GLCML

endo-Cellulase / endo-1,4-β-Glucanase

Levan

P-LEVAN

endo-Levanase / endo-Fructanase

Galactan (potato)

P-GALPOT

endo-1,4-β-Galactanase

Lichenan (Icelandic moss)

P-LICHN

Lichenase / endo-β-Glucanase

β-Glucan MW standard

P-MWBGS

β-Glucan (barley; low viscosity)

P-BGBL

β-Glucan (barley; medium viscosity)

P-BGBM

β-Glucan (barley; high viscosity)

P-BGBH

β-Glucan (oat; medium viscosity)

P-BGOM

β-Glucan CFA standard

P-BGCFA

1,3-alpha-Glucan (Mutan)

P-AGLU13

-

CM-Curdlan

P-CMCUR

endo-1,3-β-Glucanase

β-Glucan (yeast; alkali soluble)

P-BGYST

endo-1,3-β-Glucanase


Product

Product Code

Enzyme Activity

1,2-β-Glucan

P-BGLU12

endo-1,2-β-Glucanase

Mannan (ivory nut)

P-MANIV

endo-1,4-β-Mannanase

Mannan (1,4-β-D-mannan)

P-MANCB

Galactomannan (carob; low viscosity)

P-GALML

Polygalacturonic Acid (from citrus pectin)

P-PGACIT

Polygalacturonic Acid (from citrus pectin)

Rhamnogalacturonan I (potato)

P-RHAM1

Rhamnogalacturonan hydrolase / lyase

Rhamnogalacturonan (soy bean)

P-RHAGN

Xylan (beechwood)

P-XYLNBE

endo-1,4-β-Xylanase

Arabinoxylan (rye flour)

P-RAXY

Arabinoxylan (wheat flour; low viscosity)

P-WAXYL

Arabinoxylan (wheat flour; medium viscosity)

P-WAXYM

Arabinoxylan (wheat flour; high viscosity)

P-WAXYH

Arabinoxylan (wheat flour; for reducing sugar assays)

P-WAXYRS

Arabinoxylan (wheat flour; insoluble)

P-WAXYI

Xylan (birchwood, partially acetylated)

P-ACXYL

endo-1,4-β-Xylanase  /  Acetylxylan esterase


b) Oligosaccharides

Defined oligosaccharide substrates are particularly useful for researchers in the field of glycoscience. These molecules can be used to help characterise either endo- or exo-acting carbohydrate hydrolase enzymes, the activity of which can be measured through reducing sugar methods or HPLC/HPAEC-PAD analysis.

A number of borohydride reduced oligosaccharides are also available. These are particularly useful substrates in reducing sugar assays where the native oligosaccharides, themselves being reducing sugars, can produce a high ‘blank’ absorbance value, thereby reducing the sensitivity of the assay.

Oligosaccharides can also be employed as building blocks for the chemical synthesis of either colourimetric substrates or inhibitors of enzymes of interest. 

Key features of Megazyme’s oligosaccharides

√Suitable for analysis of purified enzymes

√Quantitative assay

√Chemically defined substrate

√Suitable for endo-acting enzymes

√Suitable for exo-acting enzymes


× Suitable for analysis of crude enzyme extracts

× Suitable for automation

× Suitable for gel/agar plate activity screening


1,5-α-L-Arabinooligosaccharides

Substrates for endo-1,5-α-arabinanase and α-arabinofuranosidase.

O-ABI    DP2  Arabinobiose (syrup)

O-ATR   DP3   Arabinotriose (syrup)

O-ATE   DP4   Arabinotetraose (syrup)

O-APE   DP5   Arabinopentaose (syrup)

O-AHE   DP6  Arabinohexaose (powder)

Cellooligosaccharides

Substrates for endo-cellulase, cellobiohydrolase, β-glucosidase and lipid polysaccharide monooxygenase (LPMO).

O-CTR   DP3   Cellotriose

O-CTE   DP4   Cellotetraose

O-CPE   DP5   Cellopentaose

O-CHE   DP6   Cellohexaose

Chito/Chitosanoligosaccharides

Substrates for endo-chitosanase, endo-1,4-chitinase, hexosaminidase and N-acetyl-β-D-glucosaminidase

O-CHI2     DP2   Diacetyl-chitobiose

O-CHIS2   DP2   Chitosanbiose

O-CHI3     DP3   Triacetyl-chitotriose

O-CHIS3   DP3   Chitosantriose

O-CHI4     DP4   Tetraacetyl-chitotetraose

O-CHIS4   DP4   Chitosantetraose

O-CHI5      DP5   Pentaacetyl-chitopentaose

O-CHIS5    DP5   Chitosanpentaose

O-CHI6      DP6   Hexaacetyl-chitohexaose



1,3:1,4-β-D-Glucooligosaccharides

Substrates for lichenase/β-glucanase and β-glucosidase.

Fructooligosaccharides (FOS)

Substrates for endo-inulinase, β-fructosidase and endo-levanase

O-KTR      DP3     1-Kestose

O-KTE      DP4     1,1-Kestotetraose

O-KPE      DP5     1,1,1-Kestopentaose

O-INU3     DP3     Inulotriose

O-LEV2     DP2     Levanbiose

O-LEV3     DP3     Levantriose

Galactosyl-Sucrose Oligosaccharides

Substrate for α-galactosidase.

O-VER       Verbascose



Glucomannooligosaccharides

Substrates and standards for glucomannan degrading enzymes.

O-GMM      1,4-β-D-Glucosyl-D-Mannobiose

1,3-α-D-Glucooligosaccharides

Substrates for endo-1,3-alpha-glucanase (mutanase), exo-1,3-alpha-glucanase

O-NGR        DP2      Nigerose

O-NGR3      DP3      Nigerotriose

O-NGR4      DP4      Nigerotetraose

O-NGR5      DP5      Nigeropentaose

O-NGR6      DP6      Nigerohexaose

1,3-β-D-Glucooligosaccharides

Substrates for endo-1,3-β-glucanase (laminarinase), exo-1,3-β-glucanase and β-glucosidase

O-LAM2     DP2     Laminaribiose

O-LAM3     DP3     Laminaritriose

O-LAM4     DP4     Laminaritetraose

O-LAM5     DP5     Laminaripentaose

O-LAM6     DP6     Laminarihexaose

Isomaltooligosaccharides

Substrates for endo-1,6-β-dextranase and oligo-β-1,6-glucosidase.

O-IMO2     DP2     Isomaltose

O-IMO3     DP3     Isomaltotriose

Maltooligosaccharides

Substrates for a-amylase and b-amylase.

O-MAL3     DP3     Maltotriose 

O-MAL4     DP4     Maltotetraose 

O-MAL5     DP5     Maltopentaose 

O-MAL6     DP6     Maltohexaose

O-MAL7     DP7     Maltoheptaose

O-MAL8     DP8     Maltooctaose

1,4-β-D-Xylooligosaccharides

Substrates for endo-1,4-β-xylanase and β-xylosidase

O-XBI     DP2    Xylobiose

O-XTR    DP3    Xylotriose

O-XTE    DP4    Xylotetraose

O-XPE    DP5    Xylopentaose

O-XHE   DP6    Xylohexaose


Arabinoxylooligosaccharides

Substrates for α-arabinofuranosidase, β-xylosidase and endo-1,4-β-xylanase.

O-A3X  32-α-L-Arabinofuranosyl-xylobiose (A3X)

O-A2XX  23-α-L-Arabinofuranosyl-xylotriose (A2XX)

O-A23XX 23,33-di-α-L-Arabinofuranosyl-xylotriose (A2+3XX)

O-XA3XX 33-α-L-Arabinofuranosyl-xylotetraose (XA3XX)

Oligogalacturonides

Substrates for β-galacturonanase.

O-GALA2      Digalacturonic acid

O-GALA3      Trigalacturonic acid

O-GALA4      Tetragalacturonic acid

1,2-β-D-Glucooligosaccharides

Substrates for endo-1,2-β-glucanase, exo-1,2-β-glucanase and β-glucosidase

O-SOPH      Sophorose

O-SOPH3     Sophorotriose

O-SOPH4     Sophorotetraose

O-SOPH5     Sophoropentaose

O-SOPH6     Sophorohexaose

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